PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000059.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 385aa    MW: 42126.7 Da    PI: 5.5792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000059.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r+++ +g+W+AeIrdp++     r++lg+f+taeeAa+a++  +++++g
  Itr_sc000059.1_g00005.1 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFDTAEEAARAYDIEARRIRG 161
                              69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-22112170IPR016177DNA-binding domain
PROSITE profilePS5103224.381112169IPR001471AP2/ERF domain
CDDcd000186.10E-33112171No hitNo description
SMARTSM003803.3E-37112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32112170IPR001471AP2/ERF domain
PfamPF008471.1E-11113159IPR001471AP2/ERF domain
PRINTSPR003675.6E-12113124IPR001471AP2/ERF domain
PRINTSPR003675.6E-12135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDF KPPSRSSRRL TADLLWGRAD LSGGKKSNSS GSHYSKPLRS ELVVLDDDFE  60
ADFQDFKDHS YGQVDAKPFA FSASHRPGFS SGPDSDSSKD ADNSSKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFDTAEEAAR AYDIEARRIR GKKAKVNFPD DAPLTVQKNT  180
AKVNPQKAVP DLSANDFGYY DPSNFFEEKP LTKPNPAPGD MGSKSYFPSD AANLYFSSEE  240
GSNLLDYSDF GWADRSSRSP EISSVLSAAL EADEAQFAEE TNPQKKLKSS SDNLLASNGN  300
TVEKLSEELS AFEAQMKFFD IPYLEGNCSA PTFNAYAAQD GGMNLCLDDW VPCLTRPCGA  360
RVLLGSTVVK SNIVNLGSIA TVAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-20112169563ATERF1
2gcc_A2e-20112169563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465672.11e-140PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotQ9SSA81e-59RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLE3VVR11e-143E3VVR1_PETHY; Ethylene-responsive-element-binding factor 2
STRINGPGSC0003DMT4000236091e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-50related to AP2 12